FastQCFastQC Report
Sun 21 May 2023
EGAF00007943894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397436
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19240.48410310087661906No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18600.46799987922583763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17710.4456063366177196No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC15750.39629022031220124No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11800.2969031491862841No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11690.294135407965056No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10700.26922573697400337No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8280.20833543010698577No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC8220.206825753077225No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7850.19751607806036695No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7680.19323865980937813No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5630.14165802795921859No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4890.12303867792550247No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.12127738805744824No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4720.11876125967451363No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.11624513129157901No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4610.11599351845328555No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4520.11372900290864442No Hit
GCGGCTCCACCGACCCTGCCGCAGCCACCGT4320.10869674614277518No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4180.10517416640666673No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3990.10039352247909097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)