FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540681
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54491.0078031223586552No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44210.8176725277936528No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23490.434452107619835No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT21470.3970918156916925No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT20160.3728631115204714No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC20090.3715684479388031No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA19660.36361551450855495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18560.34327080108233876No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14170.2620768993177123No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13510.24987007126198255No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13420.2482055037998376No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC11410.21103016381193349No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC10830.2003029512781104No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10480.19382963336976886No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10410.19253496978810056No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG9980.1845820363578524No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9260.1712654966606927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8630.15961352442567797No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7290.1348299644337419No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT6970.12891150234611537No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC6960.12872655040587702No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.11467020294776403No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6180.11430029906728735No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC5690.10523765399560925No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5550.10264832683227264No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)