FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569253
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20580.3615264214681346No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19430.3413245077320629No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19040.33447342394330815No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9160.16091263462818817No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9070.15933161529232168No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8550.1501968369073154No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7680.13491364999393943No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6810.11963046308056348No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5790.1017122439407434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)