FastQCFastQC Report
Sun 21 May 2023
EGAF00007943898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43040.7560785801743688No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19450.3416758453622555No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18320.32182526925637633No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10050.17654715917175667No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9330.16389900448482486No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8270.14527811008461966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7440.13069759843162881No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7170.1259545404240294No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6290.11049568469555716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.10346893209170614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)