FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences599531
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49730.829481711537852No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33490.5586033082526175No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28140.4693668884511393No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21940.36595271970923937No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21090.35177497076881764No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20050.3344280779475957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16070.2680428534971503No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC15620.2605369864110446No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15060.25119635181500205No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC14820.2471932227024124No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11500.19181660331158853No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10770.17964041892746163No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC9080.151451718092976No Hit
CCGTGGCCGGGCCCAGCAGATAACCGCATTC8880.14811577716581795No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8700.1451134303313757No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8380.1397759248479228No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7800.13010169615916442No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6710.11192081810615297No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6640.11075323878164764No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6480.1080844860399212No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6350.10591612443726847No Hit

[OK]Adapter Content

Adapter graph