FastQCFastQC Report
Sun 21 May 2023
EGAF00007943904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512552
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47110.9191262545068598No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43830.8551327475065944No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13500.2633879099096287No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12260.23919524262904054No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9570.18671276280260346No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9220.17988418736050196No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8210.16017886965615197No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7820.15256988559209603No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7640.14905804679330095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7400.14437559506157424No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6950.13559599806458664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6760.13188905711030297No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.12018292778098612No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6080.1186221105370772No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5340.1041845510309198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)