FastQCFastQC Report
Sun 21 May 2023
EGAF00007943906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545389
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23870.43766925992273403No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16850.3089537926140791No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13340.24459605895975167No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13170.24147901772863042No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11620.21305893591546582No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10750.19710701902678637No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9380.17198733381127965No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9350.17143726771167003No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9290.17033713551245075No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8740.16025259035294073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8360.15328508642455202No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7830.1435672519981151No Hit
TTCGCGGGCGGTCTGCTGGATGGCGTTCAGC7140.13091573170709347No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7110.13036566560748383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7070.12963224414133764No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7060.1294488887748011No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6450.11826421141607182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6050.11092999675461002No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5960.1092797984557811No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5910.10836302162309838No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5640.10341242672661166No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5630.10322907136007509No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC5580.10231229452739238No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5520.10121216232817311No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5460.10011203012895384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)