FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487757
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41050.8416076037863117No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17000.3485342086325773No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10910.22367695389302458No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7920.162375937198236No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5430.11132592663969969No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4930.10107492050344742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)