FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943909

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943909
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539808
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19610.3632773134151402No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14620.2708370383543779No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14180.2626859920564349No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13970.25879571995968936No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9290.1720982275179323No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8450.15653713913095027No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7940.14708933546742547No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7720.14301381231845398No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6810.1261559665658901No Hit
ACGCAGGCCGGATTCGTTATAGACGAAACGCGCGTCAACGTTGT6630.12282144762582252No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6450.11948692868575493No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6350.11763441816349517No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5980.11078012923113403No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5930.10985387397000415No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG5640.10448159345545084No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5620.10411109135099889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)