FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539808
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25100.46498014108720137No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17650.3269681071788488No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14950.27695032307783507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14700.27231904677218566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14580.27009603414547395No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10370.1921053411583378No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9400.17413598909241804No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8030.14875659493745924No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7550.13986454443061236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7240.1341217618116071No Hit
TTCAGCTACGGTAATGCTAACTGGAAAGACC7230.13393651075938112No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7040.13041674076708756No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6930.1283789791926018No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6850.126896970774794No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6610.12245094552137056No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6510.1205984349991108No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6260.11596715869346137No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6250.11578190764123542No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6040.1118916355444899No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA5830.10800136344774437No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5750.10651935502993656No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5500.10188807872428716No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5450.10096182346315727No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5430.10059132135870533No Hit

[OK]Adapter Content

Adapter graph