FastQCFastQC Report
Wed 31 May 2023
EGAF00007943911

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943911
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511837
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG20900.408333121677409No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19300.37707316977866No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19270.37648704568055846No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16880.32979249253180215No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14630.2858331851741863No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12120.23679413563302382No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12120.23679413563302382No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG11980.23405888984188325No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9670.18892733428806438No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9600.1875597113924941No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8310.1623563751741277No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8250.1611841269779246No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7840.15317376430387017No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7490.14633564982601885No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7420.14496802693044858No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7370.14399115343361266No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6170.12054618950955089No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5750.11234045213612928No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5410.10569771235764511No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5390.10530696295891075No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5380.10511158825954356No Hit
AAACAGACGGCCCTGCAGCAGCGGATCGTCGGTGAAGTCCACAC5300.10354859066460612No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5240.10237634246840303No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5200.1015948436709343No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)