FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511837
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42190.8242858566301381No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA39240.7666503203168197No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA20980.4098961192723465No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18900.36925818180397274No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18240.3563634516457388No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17660.3450317190824423No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15820.3090827743988809No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14860.2903268032596315No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12460.24343687541150796No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11970.23386351514251605No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10130.19791457045895472No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8690.1697806137500806No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8180.15981650408235434No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7270.14203740643994084No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6310.12328143530069144No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6020.11761556901904316No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5970.11663869552220726No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5670.11077745454119182No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5530.10804220875005129No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5450.10647921115511383No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5270.10296246656650457No Hit
GTTCCGGAAGAAATCATCCCGGTTACCAAAC5270.10296246656650457No Hit

[OK]Adapter Content

Adapter graph