FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504890
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT57391.1366832379330152No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA56651.1220265800471392No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA50831.0067539464041673No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT28510.5646774544950386No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA20190.39988908475113394No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG19570.3876091821981026No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16940.33551862781992114No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG16180.3204658440452376No Hit
CGGGATTTCTTCGTAGTCGTTTTCATACCAATCCGGGTTGTGCA15480.30660143793697636No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG15360.3042246826041316No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC14530.2877854582186219No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13520.267781100833845No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13500.26738497494503755No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12680.25114381350393156No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12440.246390302838242No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11910.23589296678484423No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11830.23430846322961438No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT11750.23272395967438453No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11600.22975301550832855No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10930.2164827982332785No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10250.20301451801382478No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9340.18499079007308522No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8580.16993800629840164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8560.16954188040959417No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8240.16320386618867477No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8220.1628077402998673No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7400.14656657885876131No Hit
TTTTACGTCTTCCGGAATTGCTTTGCGACGGCGTTTTTTACCTT7000.13864406108261204No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6990.13844599813820832No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6870.13606924280536353No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG6840.13547505397215237No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6380.12636415852958072No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6210.12299708847471726No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5880.11646101130939412No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5860.11606488542058667No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5640.11170750064370458No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5580.11051912297728218No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5540.10972687119966726No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5540.10972687119966726No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5460.1081423676444374No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT5450.10794430470003367No Hit
CAGCAGAGTACCACCTTTAGCGTCCATAATGATATCACCCTGGG5420.10735011586682247No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5370.10635980114480383No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG5310.10517142347838143No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)