FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478859
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39350.8217450230652447No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18230.38069661424344114No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13080.2731492986453215No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8910.18606729747169834No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7360.1536986879227497No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6990.1459719875788071No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6910.14430134966660332No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6130.12801263002261626No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5820.12153890811282653No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5110.10671199664201779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)