FastQCFastQC Report
Sun 21 May 2023
EGAF00007943919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510613
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT50890.9966452087980524No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC47780.9357380246879731No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC40590.7949268820026125No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG26990.5285803534183423No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC24170.47335261734425094No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21240.41597060787719853No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20930.40989947376976305No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT20910.40950778769831553No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18640.3650514185890293No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT15980.31295717108651755No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13270.25988370840538727No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG12710.24891649840485847No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT12420.24323705036887036No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11850.23207399733261783No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11670.22854882268959076No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10910.21366475197458742No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG9630.1885968434019502No Hit
TGGACGACGCGGGCGCTGCGGTTTGGTCGGGGTCGGTTTCACAG9550.1870300991161604No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9290.18193818018734345No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9240.1809589650087248No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG9030.1768462612585265No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8990.17606288911563162No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT8930.17488783090128923No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG8620.16881669679385367No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8590.16822916768668247No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8500.16646658036516893No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA8360.16372477786503672No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8210.16078713232918082No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7800.15275756786450795No Hit
ACGAATAGTGATGTTGTCATACTTCAGCAGCTCATCCGGGTTGT7800.15275756786450795No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7790.15256172482878422No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7240.14179035786397917No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG7230.14159451482825544No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7050.13806934018522835No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6960.1363067528637148No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6580.12886471750621312No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6240.12220605429160636No Hit
TGGATCGTTCAGGTCACGGATAGTGGCCTTGGACGTAGCCGGAG6010.11770166446996061No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5810.11378480375548605No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT5340.10458018107647082No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5210.10203422161206235No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5190.1016425355406149No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5140.10066332036199627No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)