FastQCFastQC Report
Wed 31 May 2023
EGAF00007943922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502441
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22910.4559739352481187No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG19240.3829305331372241No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14820.2949600052543483No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10950.21793603627092534No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG10920.2173389512400461No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9930.19763514522103096No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9210.183305104479929No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9170.18250899110542332No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9140.18191190607454408No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8380.1667857519589365No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7890.1570333631212421No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7270.1446936058164043No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7230.14389749244189864No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7140.14210623734926092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7010.1395188688821175No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6680.13295093354244578No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6420.12777619660815895No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6120.12180534629936648No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6080.12100923292486082No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5670.11284907083617779No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG5640.11225198580529855No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5500.10946558899452871No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5330.10608210715287963No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5220.10389279537298907No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5100.10150445524947209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)