FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences607462
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28560.47015286552903723No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26450.4354181825365208No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT25420.4184623894169512No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21480.3536023652508305No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17130.2819929477070171No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17120.28182832835634164No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16240.2673418254969035No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14940.2459413099090972No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14130.2326071425043871No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12860.2117004849686071No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12740.20972505276050188No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12510.20593880769496695No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12460.20511571094158973No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11820.19458007249836204No Hit
CAGAGAGGTGGCCTCGTTTTCCAGTTTCAGGTTGTACGGGTTAA10010.16478397002610862No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9950.16379625392205605No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9160.1507913252186968No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT9130.1502974671666705No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9120.1501328478159951No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9070.1493097510626179No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8700.1432188350876269No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC8670.14272497703560058No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8610.14173726093154798No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7870.12955542898156594No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7800.12840309352683787No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7770.1279092354748116No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7490.12329989365589945No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7140.11753821638225931No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7120.11720897768090843No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6970.11473968742077693No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6880.11325811326469803No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)