FastQCFastQC Report
Wed 31 May 2023
EGAF00007943926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences607462
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39600.6518926286747154No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26940.443484530719617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26630.4383813308486786No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22840.37599059694268944No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19150.31524605654345456No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18970.3122829082312968No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18880.31080133407521787No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18560.30553351485360397No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18380.3025703665414462No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC16610.27343274147189456No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15680.25812314185907925No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13690.22536389107466803No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13450.22141302665845763No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13060.21499287198211578No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12170.2003417497720022No Hit
GTCGGTGACGGTGAGCCAACGACCGATGCTA11040.18173976314567825No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10840.17844737613216957No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10450.1720272214558277No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10390.1710395053517751No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10130.16675940223421382No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10060.1656070667794858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9990.16445473132475777No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG9720.16001000885652106No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG9690.15951615080449477No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8930.14700508015316185No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8850.14568812534775838No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8670.14272497703560058No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8530.1404203061261445No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG8030.13218933859237286No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7940.13070776443629395No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7740.1274153774227853No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC7720.12708613872143443No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7370.12132446144779427No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA6380.10502714573092638No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6330.10420404897754923No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6290.10354557157484748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)