FastQCFastQC Report
Wed 31 May 2023
EGAF00007943928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575826
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48260.8381003983842341No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC30380.5275899316807507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24500.4254757513554442No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21470.37285568904495453No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG18250.31693601886681044No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12910.22419967142852182No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.1755738712736139No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA7880.1368468947216694No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7440.1292056975544696No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC7320.1271217346906878No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6810.1182648925196153No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6560.11392330322006995No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6430.11166567678430636No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5920.10280883461323387No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5820.10107219889341572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)