FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545046
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43570.7993820705041409No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32310.5927940027080283No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30120.552613907816955No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17280.3170374610583327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15300.28071025197873206No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12410.22768720438274934No Hit
ATCGTCACCCCACCGTCCGCGCGTCCGCGTA8970.16457326537576644No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8410.154298903211839No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8090.14842783911816618No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7380.1354014156603296No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7370.13521794490740233No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6680.12255846295542029No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5720.10494527067440179No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5670.10402791690976541No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5480.10054197260414717No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5470.10035850185121989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)