FastQCFastQC Report
Wed 31 May 2023
EGAF00007943931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551079
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA46170.8378109127729418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA40940.7429061894937024No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT28990.5260588772208703No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12730.2310013627810169No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC12710.23063843840901216No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG11110.20160448864863295No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA10740.19489038776654527No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10230.18563581628042441No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10190.18490996753641492No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG9380.17021153047022297No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9240.1676710598661898No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8680.15750917745005708No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8520.15460578247401915No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8340.1513394631259765No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7880.1429922025698675No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7530.13664102605978454No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7380.133919093269749No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7340.1331932445257395No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA7230.13119716047971344No Hit
ACGGCGGGCAACACGACGACGACGACGTTTCATTTTTGCGTAGC7230.13119716047971344No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT7040.1277493789456684No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG6190.11232509313546697No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5730.10397783257935794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)