FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007943932

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943932
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551079
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT96321.7478437755748268No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46190.8381738371449466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28550.5180745410367661No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12930.2346306065010643No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG11230.20378203488066138No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG10660.1934386902785263No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10460.18980944655847892No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10130.1838211944204007No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9220.16730813549418505No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9130.16567497582016372No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9110.16531205144815897No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG9080.16476766489015188No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9040.16404181614614238No Hit
TCCTACACCAACGGCAAACTGACTATCACCC8380.15206531186998598No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8070.14643998410391248No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7940.1440809756858817No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCA7850.14244781601186038No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA7090.12865668987568024No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6930.12575329489964232No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6800.12339428648161152No Hit
AACGGTTTTGTAGCTTGGGATTCCCAGTACA6120.11105485783345038No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5700.10343344602135084No Hit
TTCAAGGTCACCACTGCCACCGGTATCGATG5660.10270759727734136No Hit
ATGCGCGCTGCTCGTCGTCTGGCCGCTGGCA5610.10180028634732952No Hit

[OK]Adapter Content

Adapter graph