FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575646
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46260.8036188907766232No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39850.6922657327593695No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29130.5060401705214663No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23230.4035466241405308No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22180.3853062472422287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19690.3420504963119695No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18750.3257210160411086No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG18500.32137806916056044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18180.3158190971534589No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16800.2918460303728333No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC14150.2458107934390233No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12850.2232274696601731No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12170.2114146541450822No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10350.17979800085469194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10040.1744127467228123No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9980.17337043947148076No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9770.16972236409182032No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9700.16850633896526684No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9670.16798518533960108No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9360.1625999312077214No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9310.16173134183161178No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9190.1596467273289487No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8600.14939737269085512No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8540.1483550654395236No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8320.14453327218464126No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7700.13376276392088193No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC6800.11812815515090873No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6540.11361149039513868No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6140.1066627753862617No Hit
GTTTTCGACAACGCGCGTCTGGTAAACTGCG5960.10353585363226707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)