FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559045
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46550.8326699997316852No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37840.6768685883962829No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35360.6325072221377528No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18440.32984822330939373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16290.2913897807868776No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9230.16510298813154578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.13308409877559052No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6840.1223515101646558No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5810.10392723304921787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)