FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565689
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG30050.5312106121915046No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT25850.45696486938936415No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23960.42355428512840093No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC23310.4120638725518792No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22980.40623027847456816No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21540.38077459522812007No Hit
CAGACGTGGTTTGGTGGACGGTTTGTTAGTCTGGGTAGAAGTAG20480.3620363839494846No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17060.30157913623917026No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16450.2907958259750499No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16400.28991194808454823No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15320.27082018564971216No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14820.2619814067446954No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13840.24465740009086265No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13340.2358186211858459No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12960.22910114921803323No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12690.2243282086093242No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12650.2236211062969229No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12240.21637330759480916No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11130.19675121842567203No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10900.19268538012936437No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10630.18791243952065534No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10570.18685178605205333No Hit
ACCCTGCGGGCCCACGTCACCGTCCGCGCCTTTGAACAGTGCCC10330.18260917217764533No Hit
TGGCGGGTTTTTCAGACGCGGTTTCGTGGACGGCTTGTTCGTCT9540.1686439015077189No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9520.16829035035151824No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9410.16634581899241457No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8700.15379475294729084No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8590.15185022158818715No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8590.15185022158818715No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8470.14972891465098315No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8060.14248111594886945No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7890.13947593112116377No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7890.13947593112116377No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7670.1355868684029564No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7270.12851584527894303No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7240.12798551854464202No Hit
CGGTTCGCGCGGCTCACGTGGTACGCGCGGTTCACGCGGAACAC6880.12162159773303No Hit
GATACGCGGTACACGAGGTTCGCGCGGGGAACGTGGCACACGCG6590.1164951059681203No Hit
CGCATCCAGATCTACGGTCTCACCCTGGTTCAGAGCTTCGTTCA6490.11472735018711695No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6370.11260604324991293No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6230.11013118515650826No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6190.10942408284410693No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6000.10606534686020057No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5990.10588857128210023No Hit
GCGACGACCGGCCGCAAATTCTTTAAATTCACGCAGTGCCAGCG5830.10306016203249489No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)