FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565689
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48790.8624880455515309No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46360.8195315800731496No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34230.6051028038374442No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30740.5434081270804276No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT29430.5202505263492838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25920.45820229843606647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25490.45060094857775207No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23500.41542260853578555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA21210.374941001150809No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG19630.3470104598109562No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17970.3176657138463007No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17950.31731216269010004No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15180.2683453275563074No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15020.2655169183067021No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14710.2600368753855917No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13290.23493474329534425No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13100.2315760073114379No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12900.22804049574943122No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12560.22203012609401987No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11670.20629709964309012No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11490.20311513923728408No Hit
GCCAACGACGTCTCCGGTCAGTCTGGCTTCA10510.18579113258345134No Hit
AAACAGCCAACCACCACCTCCCCGATCCACA10180.1799575385061403No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9740.1721794130697256No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9590.16952777939822058No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9220.1629870830085082No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8950.1582141423997992No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8760.15485540641589282No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8580.1516734460100868No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8470.14972891465098315No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8030.14195078921456844No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7770.13735462418395974No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7690.13594041955915706No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7410.1309907033723477No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7360.13010682548184602No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7220.12763196738844135No Hit
CCTACCGATGGCCCGCCGCACCGTGGTGGCG7220.12763196738844135No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7210.127455191810341No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7180.12692486507604No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA7030.12427323140453499No Hit
CTGGACAAACTGACTCAGTCCCTGGACTCCG6680.1180860861710233No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6200.10960085842220725No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5990.10588857128210023No Hit
GATGGTGAACGTAACAACCAGGTTCTGGAAG5760.10182273298579254No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5710.10093885509529087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)