FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546352
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCGGTAATGTTAGCGTTGGTTATAACC18540.33934166983922454No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA14520.2657627317187454No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14300.26173602366240084No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13080.23940609716812605No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12500.22879023047412658No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11760.21524584883005826No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11090.2029826924766451No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG9010.16491199812575044No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8840.16180045099130233No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8720.1596040647787507No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8280.15155064866606144No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7350.13452865551878643No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7100.1299528509093039No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7030.12867162561864878No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6680.12226549916537323No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6370.11659150144961491No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.11531027615895978No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6110.11183266465575306No Hit
ATGGATCCGAACACCGTTTCTTCTTTCCAGG6060.11091750373385656No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5950.10890414970568425No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.10560957038685682No Hit

[OK]Adapter Content

Adapter graph