FastQCFastQC Report
Wed 31 May 2023
EGAF00007943945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580265
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10590.18250282198650616No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7820.13476601208068725No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7540.12994063057396188No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6740.11615382626903226No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6650.11460281078472766No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6630.11425814067710444No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)