FastQCFastQC Report
Sun 21 May 2023
EGAF00007943946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences580265
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10630.18319216220175266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10530.18146881166363646No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8950.1542398731614004No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7900.13614469251118025No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7790.1342490069192524No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7010.12080687272194601No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6750.11632616132284387No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6050.10426270755603043No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5850.10081600647979802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)