FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567508
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47970.8452744278494753No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11590.20422619593027763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11490.20246410623286368No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10850.19118673216941437No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6860.12087935324259745No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6200.10924956123966535No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.10713505360276859No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.1060777997843202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)