FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences594663
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT32590.5480414957715546No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC28710.48279445669227783No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC28510.47943120725520166No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28270.47539530793071033No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26230.44109016367253384No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21460.3608766645982682No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG19290.3243854082059923No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17150.2883986392292778No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16680.28049500305214886No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15740.2646877306978911No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15230.25611144463334695No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15180.2552706322740779No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14950.2514028954214404No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12840.21592061386028727No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11620.19540479229412291No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11540.19405949251929244No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11200.18834196847626303No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA10980.18464239409547928No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10370.17438448331239711No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10230.17203020870644384No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT9810.16496738488858395No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9710.1632857601700459No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9420.1584090484862855No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9070.1525233619714023No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9050.15218703702769468No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8690.14613318804095765No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8630.14512421320983482No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8400.14125647635719726No Hit
TGGACGACCGCCGCCGCGACCACGACCGCGGCCACGACCGCGAC8380.14092015141348968No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7910.13301651523636077No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7760.13049407815855366No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7620.12813980355260038No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7360.12376757928440141No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC7180.12074065479103291No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6960.11704108041024916No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6910.11620026805098013No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6640.11165988131092736No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6480.10896928176126645No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6390.1074558195145822No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6320.10627868221160557No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)