FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences606041
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55510.9159446308088067No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51310.8466423888812804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27350.45128959921853473No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA23800.3927127042559827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20000.3300106758453636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19930.32885563847990484No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19690.3248955103697605No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18620.3072399392120335No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13950.2301824464021411No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12240.20196653361736253No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9820.16203524184007354No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9760.16104520981253745No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9500.1567550710265477No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8800.14520469737195998No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8430.13909949986882075No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8320.13728444115167127No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7130.11764880593887211No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7100.11715378992510408No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6870.11335866715288238No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6370.1051084002567483No Hit

[OK]Adapter Content

Adapter graph