FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences604747
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA56600.9359285783972471No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51210.8468003975216082No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA28080.46432640426492405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24350.40264771879810896No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20780.34361476782852995No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19990.33055145374842704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19810.3275750024390365No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18980.3138502547346246No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13400.22158026414351786No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11670.19297325989215325No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10180.16833485738664267No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9540.15775191939769853No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9360.154775468088308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9130.1509722247485312No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8890.14700362300267716No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8350.13807426907450554No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7410.12253057890324384No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6970.11525480903584474No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6950.11492409222369024No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6770.11194764091429969No Hit
ACTTACCACTACGTTAACAAAGAAATCATTT6140.10153006133143282No Hit

[OK]Adapter Content

Adapter graph