FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387560
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13310.3434306946021261No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10210.26344307978119513No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8400.21674063370832902No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6730.17365053153060173No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5580.14397770667767573No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5380.13881721539890599No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4280.11043451336567242No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3990.10295180101145629No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG3920.10114562906388688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)