FastQCFastQC Report
Sun 21 May 2023
EGAF00007943962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387560
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57251.4771906285478378No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12810.33052946640520176No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10710.2763443079781195No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9520.2456393848694396No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9510.2453813603055011No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6750.1741665806584787No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6060.1563628857467231No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4760.1228196924347198No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4220.10888636598204149No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4130.1065641449065951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)