FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400813
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23880.5957890587381147No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22080.5508803357176539No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10300.2569776928393041No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8990.22429412219663533No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7690.19186004445963578No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7270.18138134242152826No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7010.17489452687412835No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6600.16466531774169No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6490.16192089577932853No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.13747059102374423No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5490.13697160521240578No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4980.1242474670232752No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4930.12300000249492907No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4760.1187586230985522No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4690.1170121727588676No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4430.11052535721146768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)