FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences373874
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64391.7222379732209248No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22130.5919106436927949No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9400.25142160193006197No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7790.2083589658548067No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7150.19124089934041952No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7120.1904384899725576No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6650.17786740987605448No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6280.16797102767242442No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5980.15994693399380538No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4780.1278505592793294No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4720.1262457405436056No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4450.1190240562328485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4440.11875658644356121No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4250.1136746604471025No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4220.1128722510792406No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)