FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389443
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58721.5077944654288304No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23140.5941819470371787No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9020.2316128419306548No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8240.21158423697434542No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7210.18513620735255223No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG7150.18359554543283613No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6960.17871678268706848No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6380.16382371746314608No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6350.16305338650328804No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.1353214719483981No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5060.12992915522939172No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4900.1258207234434821No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4820.12376650755052729No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4670.11991485275123703No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4600.11811741384490156No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4420.11349542808575325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)