FastQCFastQC Report
Sun 21 May 2023
EGAF00007943970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21850.5109222790173457No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19460.45503650112940713No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18130.42393688414574265No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12110.28317019674599797No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11620.27171244312043735No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10620.24832927245602796No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10520.24599095538958698No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9860.2305580627510768No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9830.2298565676311445No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9460.22120479448531302No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA8990.2102147042730406No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG7980.1865977019019871No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7790.1821548994757493No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7150.16718967025052728No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7130.1667220068372391No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6840.15994088734456036No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6690.15643341174489897No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6370.14895079713228795No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5970.13959752886652418No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5930.1386622020399478No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5900.13796070692001552No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5660.13234874596055726No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5620.1314134191339809No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5340.12486613134794625No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5270.12322930940143759No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5260.12299547769479349No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5110.11948800209513209No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5010.11714968502869116No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4880.11410987284231792No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4860.11364220942902974No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4850.11340837772238564No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4570.10686108993635102No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4450.10405510945662189No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4440.10382127774997778No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG4330.10124912897689275No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4280.10007997044367228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)