FastQCFastQC Report
Wed 31 May 2023
EGAF00007943972

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943972
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436649
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19810.4536824772299948No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19400.4442927843645582No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15350.3515409402059778No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12280.2812327521647823No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11840.2711560086018747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11230.25718597775329843No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10900.24962842008111777No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10660.24413201450135005No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10440.2390936427198963No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA9650.22100130768649418No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9270.2122986655185286No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG8660.19832863466995232No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7700.17634301235088137No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7390.1692434884770147No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7340.16809840398122977No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6960.1593957618132642No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6900.15802166041832227No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6540.14977705204867067No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6540.14977705204867067No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6470.14817393375457175No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6030.13809719019166425No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5920.13557800430093736No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5810.13305881841021047No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5720.13099766631779758No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5700.1305396325194836No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5510.12618831143550083No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5370.12298207484730299No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5140.11771468616669226No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4950.11336336508270944No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4870.11153122988945355No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4800.10992811159535462No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4770.10924106089788366No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4750.10878302709956968No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)