FastQCFastQC Report
Wed 31 May 2023
EGAF00007943973

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943973
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393335
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12730.3236426964292524No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12100.3076258151448511No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11270.2865242096431795No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG10610.26974461972618763No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9860.2506769039114241No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9630.2448294710615633No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8470.21533807060139576No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8470.21533807060139576No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG7110.18076194592395795No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6920.1759314579175512No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5990.15228749030724445No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5280.134236719335935No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4990.12686386922089313No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4790.12177914500362287No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4410.11211816899080936No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4300.10932157067131071No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4030.10245719297799585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)