FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007943974

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943974
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393335
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64981.6520268981911095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27950.7105902093635197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15350.39025258367549287No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA10060.2557616281286944No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9760.248134541802789No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9650.2453379434832903No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9420.23949051063342952No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8650.219914322396939No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA7660.19474493752145117No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7300.1855924339303647No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6030.1533044351506985No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5740.14593158503565662No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5480.13932144355320528No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5430.13805026249888772No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5070.12889775890780125No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4560.11593171215376206No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4480.11389782246685395No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4160.10576226371922152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)