FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384818
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10600.27545489036375637No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8180.21256801916750256No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7990.20763062018928427No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7260.18866061358876143No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7190.18684157185994418No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG5660.14708251693008123No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5530.14370429657656347No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4890.1270730579130914No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4840.12577374239250763No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4280.11122140856196956No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4270.1109615454578528No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)