FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384818
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65901.7124978561293909No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10620.27597461657198985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9960.25882365170028426No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8070.2097095250222183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7870.20451226293988328No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7800.202693221211066No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6900.17930554184055839No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC6180.1605953983441523No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5690.14786210624243148No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5530.14370429657656347No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4820.12525401618427412No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4810.12499415308015738No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4680.12161593272663962No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4470.11615880754018784No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4430.11511935512372082No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4340.11278058718667006No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4120.10706359889610154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)