FastQCFastQC Report
Sun 21 May 2023
EGAF00007943977

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943977
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449670
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14840.3300197922921253No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13730.30533502346164965No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG13110.2915471345653479No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12230.2719772277447906No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11170.24840438543821025No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9390.2088198011875375No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9080.20192585673938665No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8940.19881246247247983No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8560.19036182089087553No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8420.1872484266239687No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8280.18413503235706186No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7510.16701136388907423No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7030.15633686925967932No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6800.15122200724976093No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6560.1458847599350635No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6450.14343852158249382No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6320.14054751262036605No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5880.1307625592100874No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5770.12831632085751773No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5090.11319412013254164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4960.11030311117041386No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4900.1089687993417395No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4770.10607779037961171No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4600.10229724019836768No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT4550.1011853136744724No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4540.10096292836969332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)