FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943978

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943978
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449670
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21950.4881357439900372No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC15590.3466986901505549No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15420.34291813996931086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13900.30911557364289366No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC13640.3033335557186381No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC12830.2853203460315342No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12140.2699757600017791No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10920.24284475281873374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10900.24239998220917564No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9560.21260035136878153No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9500.2112660395401072No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8810.19592145351035203No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8550.19013943558609647No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8070.1794649409567016No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7780.17301576711810884No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7720.1716814552894345No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7520.16723374919385328No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7000.15566971334534213No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6740.14988769542108657No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5620.12498054128583183No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5550.1234238441523784No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5540.12320145884759934No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5230.11630751439944849No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5230.11630751439944849No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5120.11386127604687882No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4760.10585540507483265No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG4560.10140769897925145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)