FastQCFastQC Report
Wed 31 May 2023
EGAF00007943982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402534
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63581.5794939061048257No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31160.7740961011989049No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20400.5067894885897838No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16560.41139382014935383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15350.38133424754182255No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13310.33065529868284416No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12910.32071824988696607No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12510.310781201091088No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12260.30457054559366414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11520.2861870053212896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11370.28246061202283534No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8080.20072838567673787No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7640.18979763200127195No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7440.18482910760333288No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA6340.15750222341466807No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5990.14880730571827475No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.14607461729940827No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT5610.13936710936219052No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5310.13191432276528195No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5210.1294300605663124No Hit
GTGATGTTTCCGCCGCAGTCCGTGCTGTCCC4630.11502133981228914No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4540.11278550383321656No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4420.10980438919445314No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4270.10607799589599884No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4240.105332717236308No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4170.10359373369702933No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)