FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66991.5971866245455089No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38170.9100554330333195No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12300.29325862788341184No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6710.15998092626810514No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6070.1447219407522203No Hit
CGTCGTGAACACGGTGGCCACGACGATGATC4720.11253501817965071No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4430.1056207903677654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)