FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007943988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416268
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63271.519934273112514No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49891.198506731240451No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA44771.0755090470562234No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22460.5395562474175291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19310.4638838440619985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18920.4545148798370281No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13030.31301949705478205No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11040.26521375652224044No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9160.22005054436084445No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.20731836220896152No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7580.182094227757118No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7020.16864135604946814No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6490.1559091738975852No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.15470802463797362No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6150.14774135893222637No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6050.14533906041300315No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6020.1446183708572362No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5710.1371712454476443No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5240.12588044240729532No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5110.12275745433230514No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5010.12035515581308195No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4980.119634466257315No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4940.11867354684962572No Hit
GAAAAACAGCGTAAACAAAAAGATCTGATTA4850.11651147818232485No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4500.10810343336504367No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4180.10041607810352947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)