FastQCFastQC Report
Wed 31 May 2023
EGAF00007943995

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007943995
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515176
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21610.41946829821264964No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15410.2991210770688076No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13860.26903427178284706No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13840.2686460549404475No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11100.21546034753171733No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10780.20924887805332548No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10690.20750190226252774No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9400.1824619159277606No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8930.17333882013137258No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8200.15916890538379116No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8190.15897479696259142No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8020.15567495380219576No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7560.14674596642700746No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7390.1434461232666118No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6760.13121729273102783No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6650.12908210009783064No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6590.12791744957063217No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6420.1246176064102365No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6330.1228706306194388No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6300.12228830535583955No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5860.11374753482305075No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG5770.11200055903225305No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5560.10792428218705839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)